Thanks for the response! I'm probably going to try that whenever this full scan finishes. I'm currently at almost 7 hours for this scan. So far, Malwarebytes has discovered one thing, a Malware.AI. I'm not sure if this file is an issue as I know where I downloaded it from and I have not actually opened the file since I downloaded it almost a year ago. However, I'm still going to just delete it after the scan to be safe since I never got around to using it anyway.
However, I do have an update on my Windows issue. Since I've been sitting around waiting for this scan to finish, I've been messing around in the settings. I unregistered Malwarebytes in WSC and fully activated Windows Defender. After doing that, the "VirTool:Win32/DefenderTamperingRestore" moved from active threat to the Protection History as "Abandoned". I still haven't removed the Malware.AI that was detected so I think those two things are unrelated, but if there's something to be thankful for it's this issue alerting me to possible Malware on my system.